基于网络药理学探讨地黄治疗糖尿病肾病合并抑郁症的作用机制

Mechanisms of Dihuang (Rehmanniae Radix) in treating diabetic nephropathy complicated with depression based on network pharmacology

  • 摘要:
    目的基于网络药理学预测地黄治疗糖尿病肾病合并抑郁症的分子作用机制。
    方法利用中医药整合药理学研究平台(TCMIP)和中药系统药理学数据库和分析平台(TCMSP)以及文献检索地黄活性成分,结合SwissTargetPrediction、PubChem数据库查找成分靶点;以“糖尿病肾病” “抑郁症”为关键词在治疗目标数据库(TTD)、DisGeNET和Ensembl数据库搜集疾病靶点,使用Venny 2.1.0对疾病-成分靶点进行映射得到潜在靶点;利用基因/蛋白相互作用检索搜查工具(STRING)数据库结合Cytoscape 3.7.2构建蛋白质相互作用(PPI)网络,基于COXPRESdb 7.3数据库搜集关键靶点共表达基因;运用R语言对潜在靶点进行基因本体论(GO)与京都基因与基因组百科全书(KEGG)富集分析。采用Discovery Studio 4.5对靶点-成分对接实现初步验证和评估。
    结果根据数据库及文献报道,地黄含65种有效化学成分,治疗糖尿病肾病合并抑郁症的相关靶点155个,PPI筛选显示关键靶点有丝氨酸/苏氨酸蛋白激酶1(AKT1)、信号传导与转录激活因子3(STAT3)、白细胞介素-6(IL-6)、丝裂原活化蛋白激酶1(MAPK1)和血管内皮生长因子A(VEGFA)等。GO 富集分析主要涉及血脂代谢、蛋白质分泌调节、细胞体内稳态和磷脂酰肌醇3激酶活性等生物过程;KEGG通路富集分析涉及AGE-RAGE信号通路在糖尿病合并症中的作用、胰岛素抵抗(IR)、神经营养因子信号通路、Toll样受体信号通路、松弛素信号通路和表皮生长因子受体酪氨酸激酶抑制剂(EGFR-TKIs)等。分子对接显示靶点与水苏糖、甘露三糖、毛蕊花糖和黑曲霉二糖等成分具有较高亲和力。
    结论通过网络构建分析,地黄可能通过调控炎症的发生、调节血糖代谢和营养神经等通路治疗糖尿病肾病合并抑郁症。

     

    Abstract:
    ObjectiveTo predict the molecular mechanism of Dihuang (Rehmanniae Radix) in the treatment of diabetic nephropathy (DN) complicated with depression based on network pharmacology.
    MethodsThe components of Dihuang (Rehmanniae Radix) were identified from the Integrated Pharmacology-based Research Platform of Traditional Chinese Medicine (TCMIP), Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP), and relevant literature. The component targets were detected by combining the SwissTargetPrediction and PubChem databases. Disease targets were collected from the Therapeutic Target Database (TTD), DisGeNET, and Ensembl databases with “diabetic nephropathy” and “depression” as keywords. The disease-component targets were mapped using Venny 2.1.0 to obtain potential targets. A protein-protein interaction (PPI) network was constructed using the Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) database and Cytoscape 3.7.2. The co-expression genes of the key targets were collected based on the COXPRESdb 7.3. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed for potential targets using R language. Target-component docking was verified and evaluated using Discovery Studio 4.5.
    ResultsAccording to the databases and literature reports, Dihuang (Rehmanniae Radix) contained 65 active components, and had 155 related targets for the treatment of DN complicated with depression. PPI screening showed that the key targets included serine/threonine protein kinase 1 (AKT1), signal transducer and activator transcription 3 (STAT3), interleukin 6 (IL-6), mitogen-activated protein kinase 1 (MAPK1), and vascular endothelial growth factor A (VEGFA), etc. GO enrichment analysis mainly involved biological processes, such as lipid metabolism, protein secretion regulation, cell homeostasis, and phosphatidylinositol 3 kinase activity. KEGG pathway enrichment analysis included the role of the AGE-RAGE signaling pathway in diabetic complements, insulin resistance (IR), neurotrophin signal path, Toll-like receptor signaling pathway, relaxin signaling pathway, epidermal growth factor receptor tyrosine kinase inhibitors (EGFR-TKIs), etc. Molecular docking showed that the target had high affinity for stachyose, manninotriose, verbascose, nigerose, etc.
    Conclusion Based on network parmacology, this study preliminarily predict the effects of Dihuang (Rehmanniae Radix) in treating DN complicated with depression by regulating inflammation, glucose metabolism, nution nerve, etc.

     

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