基于lncRNA-miRNA-mRNA网络分析的六味地黄汤改善D-半乳糖诱导衰老小鼠认知功能障碍的分子机制

The molecular mechanisms of Liuwei Dihuang Decoction in improving cognitive dysfunction in D-galactose-induced aged mice revealed by an lncRNA‒miRNA‒mRNA network analysis

  • 摘要:
    目的 通过长链非编码RNA(lncRNA)-微小RNA(miRNA)-信使RNA(mRNA)调控网络,探讨六味地黄汤(LWDHD)改善D-半乳糖(D-gal)诱导的衰老小鼠认知功能障碍的潜在机制。
    方法 将70只无特定病原体(SPF)雄性C57BL/6小鼠(体质量18 – 22 g)随机分为对照组、模型组、低剂量LWDHD(LWDHD-L)组、高剂量LWDHD(LWDHD-H)组和阳性对照维生素E组,每组14只。除对照组外,其余各组每日皮下注射D-gal(100 mg/kg),连续6周,以建立衰老小鼠模型。在此期间,LWDHD-L、LWDHD-H组分别给予10、20 g/kg LWDHD,维生素 E组给予200 mg/kg维生素E,按照10 mL/kg灌胃,每日1次。采用莫里斯水迷宫(MWM)测试评估小鼠行为学变化,于第5天进行定位航行实验并记录逃避潜伏期,第6天进行空间探索试验并记录小鼠穿越平台次数及目标象限停留时间。利用苏木精-伊红(HE)染色观察小鼠海马区病理学改变,采用免疫组化检测小鼠海马区胶质纤维酸性蛋白(GFAP)和离子化钙结合接头分子 1(IBA1)的表达水平,以评价LWDHD的疗效。根据药效学结果,选择对照组、模型组和LWDHD-H组进行基因芯片分析,并依据预设的倍数变化和统计学标准筛选差异表达lncRNA、miRNA和mRNA,随后进行基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析。选择3个LWDHD-H调节的miRNA作为核心节点。分别使用starBase/miRcode和TargetScan/miRDB/miRTarBase预测它们的上游lncRNA和下游mRNA,并通过表达相关分析和多靶标微RNA(MuTaMe)方法进一步筛选候选相互作用。使用Cytoscape整合并可视化 lncRNA-miRNA-mRNA调控网络。采用逆转录实时定量聚合酶链反应(RT-qPCR)检测对照组、模型组以及LWDHD-H组中3个lncRNA (NONMMUT096619.1、NONMMUT108543.1、NONMMUT051216.2)、3个miRNA (mmu-miR-764-5p、 mmu-miR-300-5p、 mmu-miR-8102)和3个mRNA (Itgb4、Dnmt3a、Abca8a)的相对表达水平,以验证芯片分析结果。采用酶联免疫吸附测定法(ELISA)检测小鼠海马及血清中肿瘤坏死因子(TNF)-α、白介素(IL)-1β和IL-6的表达水平,评价LWDHD对炎症因子的抑制作用。
    结果 行为学评价结果发现模型组小鼠逃避潜伏期延长,穿越平台次数减少,目标象限停留时间缩短。在海马组织病理及胶质细胞活化评价方面,模型组海马齿状回(DG)及阿蒙角(CA)3区 GFAP、IBA1表达水平显著升高(P < 0.01),HE染色显示模型组小鼠海马区出现明显病理损伤。LWDHD-L、LWDHD-H及维生素 E组可缩短衰老小鼠逃避潜伏期,增加穿越平台次数,降低海马DG及CA3区 GFAP、IBA1表达(P < 0.05或P < 0.01),改善小鼠脑内海马区病理损伤。与模型组比较,LWDHD-H组和维生素E组小鼠目标象限停留时间显著延长(P < 0.01)。与LWDHD-L组比较,LWDHD-H组小鼠逃避潜伏期缩短,目标象限停留时间延长(P < 0.05或P < 0.01)。进一步筛选获得经LWDHD-H干预后异常表达趋势发生逆转的99个lncRNA、3个miRNA和23个mRNA。RT-qPCR结果显示,模型组NONMMUT096619.1、NONMMUT108543.1、 NONMMUT051216.2、mmu-miR-764-5p、Itgb4、Dnmt3a 及Abca8a表达水平升高,mmu-miR-300-5p及 mmu-miR-8102表达水平降低(P < 0.01),LWDHD-H组NONMMUT096619.1、NONMMUT108543.1、 NONMMUT051216.2、mmu-miR-764-5p、Itgb4、Dnmt3a 及Abca8a表达水平降低,mmu-miR-300-5p以及 mmu-miR-8102表达水平升高(P < 0.01),上述表达趋势与芯片分析结果总体一致,其中LWDHD-H组mmu-miR-8102表达水平较模型组显著升高(P < 0.01)。进一步构建了一个包含191个lncRNA、3个miRNA和68个mRNA的LWDHD-H相关海马lncRNA-miRNA-mRNA调控网络,以mmu-miR-764-5p、mmu-miR-300-5p和mmu-miR-8102作为核心调控节点。 KEGG富集分析显示网络中的mRNA主要富集于白细胞跨内皮迁移、线粒体自噬和类固醇激素生物合成等通路。GO功能分析显示,相关生物学过程主要涉及I-κB激酶(IKK)/核因子κB(NF-κB)等信号通路。炎症因子检测发现模型组小鼠海马组织及血清中TNF-α、IL-1β和IL-6表达水平显著升高(P < 0.01),LWDHD-L、LWDHD-H及维生素E组可有效降低海马组织及血清中TNF-α、IL-1β和IL-6表达水平(P < 0.05或P < 0.01),与LWDHD-L组相比,LWDHD-H组海马组织及血清中IL-1β及IL-6表达水平均显著下降(P < 0.05或P < 0.01)。
    结论 LWDHD可有效改善D-gal诱导的衰老小鼠认知功能障碍,其机制可能与减轻神经炎症及调控海马lncRNA-miRNA-mRNA网络相关。

     

    Abstract:
    Objective To elucidate the potential mechanisms by which Liuwei Dihuang Decoction (六味地黄汤, LWDHD) ameliorates D-galactose (D-gal)-induced cognitive impairment in aged mice through a long noncoding RNA (lncRNA)-micro RNA (miRNA)-messenger RNA (mRNA) regulatory network analysis.
    Methods A total of 70 specific pathogen-free (SPF) male C57BL/6 mice (weighing 18 − 22 g) were randomly divided into control, model, low-dose LWDHD (LWDHD-L), high-dose LWDHD (LWDHD-H), and positive control (vitamin E) groups (n = 14 per group). An aged mouse model was established by subcutaneous injection of D-gal (100 mg/kg) once daily for 6 weeks. During this period, the LWDHD-L and LWDHD-H groups were administered LWDHD at doses of 10 and 20 g/kg, respectively, while the vitamin E group received 200 mg/kg of vitamin E by gavage at 10 mL/kg once daily. The Morris water maze (MWM) test was used to assess behavioral changes in mice. A navigation test was conducted on day 5 to record escape latency, and a probe trial was performed on day 6 to record the number of platform crossings and the time spent in the target quadrant. Hematoxylin and eosin (HE) staining was used to observe pathological changes in the hippocampus. Immunohistochemistry was used to assess the expression levels of glial fibrillary acidic protein (GFAP) and ionized calcium-binding adaptor molecule 1 (IBA1) in the hippocampus to evaluate the efficacy of LWDHD treatment. Based on the efficacy results, the control, model, and LWDHD-H groups were selected for microarray analysis. Differentially expressed lncRNAs, miRNAs, and mRNAs were screened according to predefined fold-change and statistical significance criteria. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were subsequently performed. Three LWDHD-H-regulated miRNAs were selected as core nodes. Their upstream lncRNAs and downstream mRNAs were predicted using starBase/miRcode and TargetScan/miRDB/miRTarBase, respectively, and candidate interactions were further screened by expression-correlation analysis and the Multiple Target MiRNA (MuTaMe) method. Significant lncRNA-miRNA-mRNA regulatory relationships were integrated and visualized using Cytoscape. The relative expression levels of three lncRNAs (NONMMUT096619.1, NONMMUT108543.1, and NONMMUT051216.2), three miRNAs (mmu-miR-764-5p, mmu-miR-300-5p, and mmu-miR-8102), and three mRNAs (Itgb4, Dnmt3a, and Abca8a) in the control, model, and LWDHD-H groups were measured by reverse transcription quantitative polymerase chain reaction (RT-qPCR) to validate the microarray results. In addition, the levels of tumor necrosis factor (TNF)-α, interleukin (IL)-1β, and IL-6 in the hippocampus and serum of aged mice were measured by enzyme-linked immunosorbent assay (ELISA) to evaluate the inhibitory effects of LWDHD on inflammatory cytokines.
    Results For behavioral assessment, mice in the model group exhibited prolonged escape latency, fewer platform crossings, and less time spent in the target quadrant. For the hippocampal pathological and glial activation assessment, the expression levels of GFAP and IBA1 in the dentate gyrus (DG) and cornu ammonis 3 (CA3) regions of the hippocampus were significantly increased (P < 0.01), and HE staining revealed marked pathological damage in the hippocampus in the model group. The LWDHD-L, LWDHD-H, and vitamin E groups effectively shortened the escape latency, increased the number of platform crossings, decreased the expression levels of GFAP and IBA1 in the DG and CA3 regions of the hippocampus (P < 0.05 or P < 0.01), and ameliorated hippocampal pathological damage. The time spent in the target quadrant was significantly increased in the LWDHD-H and vitamin E groups compared with the model group (P < 0.01). Compared with the LWDHD-L group, the LWDHD-H group showed a shorter escape latency and a longer time spent in the target quadrant (P < 0.05 or P < 0.01). Subsequently, 99 lncRNAs, 3 miRNAs, and 23 mRNAs whose dysregulated expression was reversed by LWDHD-H treatment were identified. RT-qPCR showed that in the model group, the expression levels of NONMMUT096619.1, NONMMUT108543.1, NONMMUT-051216.2, mmu-miR-764-5p, Itgb4, Dnmt3a, and Abca8a were upregulated, whereas that of mmu-miR-300-5p and mmu-miR-8102 were downregulated (P < 0.01). In the LWDHD-H group, the expression levels of NONMMUT096619.1, NONMMUT108543.1, NONMMUT-051216.2, mmu-miR-764-5p, Itgb4, Dnmt3a, and Abca8a were downregulated, while the expression levels of mmu-miR-300-5p and mmu-miR-8102 were upregulated. These expression trends were generally consistent with the microarray findings, and mmu-miR-8102 expression level was significantly elevated in the LWDHD-H group compared with the model group (P < 0.01). An LWDHD-H-associated hippocampal lncRNA-miRNA-mRNA regulatory network comprising 191 lncRNAs, 3 miRNAs, and 68 mRNAs was constructed, with mmu-miR-764-5p, mmu-miR-300-5p, and mmu-miR-8102 serving as core regulatory nodes. KEGG enrichment analysis revealed significant enrichment in leukocyte transendothelial migration, mitophagy, and steroid hormone biosynthesis pathways. GO functional analysis revealed enriched biological processes, including the I-κB kinase (IKK)/nuclear factor (NF)-κB signaling pathway. For inflammatory cytokine assessment, the levels of TNF-α, IL-1β, and IL-6 in the hippocampus and serum of the model group were significantly elevated (P < 0.01), while the LWDHD-L, LWDHD-H, and vitamin E groups effectively reduced the levels of TNF-α, IL-1β, and IL-6 in the hippocampus and serum (P < 0.05 or P < 0.01). Compared with the LWDHD-L group, the LWDHD-H group showed a significant reduction in the levels of IL-1β and IL-6 in the hippocampus and serum (P < 0.05 or P < 0.01).
    Conclusion LWDHD effectively ameliorates D-gal-induced cognitive dysfunction in aged mice, and its mechanism may be associated with attenuation of neuroinflammation and modulation of the hippocampal lncRNA-miRNA-mRNA regulatory network.

     

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